Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7692997_7696945_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7692997 - 7696945

Intron Length:

3949

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

CTTTTAATTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATGCTTTTAATT

Flanking Amino Acid:

EIELSYAKQLRNLSKKYQPK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.5

1.07

0.7

84.1

30.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

80.8

0.69

0.8

78.9

33.2

Minor 5ss

39.6

-1.2

2.8

49.9

46.3

Minor BPS

66.1

0.58

1.2

74.92

36.3

Associated Gene:

Gene:

FNBP1

Ensembl Gene ID:

ENSAPLG00000009326

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009735

7662569 - 7751665

89097

ENSAPLT00000045082

7686194 - 7751665

65472

ENSAPLT00000026274

7690145 - 7752794

62650

ENSAPLT00000025496

7690145 - 7751665

61521