Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7697003_7699480_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7697003 - 7699480

Intron Length:

2478

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGTTCA

5'SS Class:

strong_major

3'SS Sequence:

TTGTCCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GACTAAA

U12 Branch Point Sequence:

AGGGACTAAAAG

Flanking Amino Acid:

KKNSKEEEEYRYTSTKAFLA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.9

77.9

Major BPS

59.8

0.24

1.2

61.9

33.9

Major PPT

0.74

0.8

77.6

31.1

Minor 5ss

39.4

-1.2

2.9

50.7

45.6

Minor BPS

41.2

-0.8

1.9

40.68

Associated Gene:

Gene:

FNBP1

Ensembl Gene ID:

ENSAPLG00000009326

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045082

7686194 - 7751665

65472

ENSAPLT00000026274

7690145 - 7752794

62650

ENSAPLT00000025496

7690145 - 7751665

61521

ENSAPLT00000009735

7662569 - 7751665

89097