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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7699629_7719710_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7699629 - 7719710
Intron Length:
20082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAACTGAA
5'SS Class:
major
3'SS Sequence:
GGCATTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
AAGTTATAAACT
Flanking Amino Acid:
VQELKQERKSARQQAQLRHQ
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.2
68.9
38
Major BPS
78.6
0.71
1
78.6
31
Major PPT
69.2
0.43
0.9
65.9
40.8
Minor 5ss
38
-1.4
3.2
49.3
47
Minor BPS
49.7
0.06
1.9
68.3
42.4

Associated Gene:

Gene:
FNBP1
Ensembl Gene ID:
ENSAPLG00000009326
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025496
7690145 - 7751665
61521
ENSAPLT00000009735
7662569 - 7751665
89097
ENSAPLT00000045082
7686194 - 7751665
65472
ENSAPLT00000026274
7690145 - 7752794
62650