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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7719840_7721592_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7719840 - 7721592
Intron Length:
1753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TCTAATGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTGATCTGAATG
Flanking Amino Acid:
YYTHIPNIFQKIQEMEERRI
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
72.5
0.51
0.9
69.5
41.2
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
56
0.05
1.6
60.49
41.7

Associated Gene:

Gene:
FNBP1
Ensembl Gene ID:
ENSAPLG00000009326
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045082
7686194 - 7751665
65472
ENSAPLT00000026274
7690145 - 7752794
62650
ENSAPLT00000025496
7690145 - 7751665
61521
ENSAPLT00000009735
7662569 - 7751665
89097