About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7721740_7726925_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7721740 - 7726925
Intron Length:
5186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
AGGTATTTACCT
Flanking Amino Acid:
KAAESIDHKNDSQMVIEAFK
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1.2
85.2
32.2
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
78.1
0.63
0.9
74.3
35.1
Minor 5ss
40
-1.1
3.4
57.4
40.7
Minor BPS
50.9
0.11
1.8
67.85
43

Associated Gene:

Gene:
FNBP1
Ensembl Gene ID:
ENSAPLG00000009326
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009735
7662569 - 7751665
89097
ENSAPLT00000045082
7686194 - 7751665
65472
ENSAPLT00000026274
7690145 - 7752794
62650
ENSAPLT00000025496
7690145 - 7751665
61521