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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7741064_7743700_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7741064 - 7743700
Intron Length:
2637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TAACATTTATAT
Flanking Amino Acid:
NRDIQKEMDQRDALTKMKDV
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
74.1
38.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
90.3
0.91
0.6
88.5
21.1
Minor 5ss
37.2
-1.4
3
47
48.3
Minor BPS
46.1
-0.2
1.8
62.25
40.9

Associated Gene:

Gene:
FNBP1
Ensembl Gene ID:
ENSAPLG00000009326
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025496
7690145 - 7751665
61521
ENSAPLT00000009735
7662569 - 7751665
89097
ENSAPLT00000045082
7686194 - 7751665
65472
ENSAPLT00000030552
7733020 - 7749394
16375
ENSAPLT00000026274
7690145 - 7752794
62650