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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7743834_7744998_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7743834 - 7744998
Intron Length:
1165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAGCAC
U12 Branch Point Sequence:
ATGTGTGAGACT
Flanking Amino Acid:
KLRLEVQKFEGWLAEVEGRL
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
34.5
Major BPS
48.2
-0.1
1.4
57.7
39
Major PPT
93
0.97
0.6
88.6
20.7
Minor 5ss
34.6
-1.7
3.5
45.7
49.5
Minor BPS
39.6
-0.7
2.5
60.05
44.4

Associated Gene:

Gene:
FNBP1
Ensembl Gene ID:
ENSAPLG00000009326
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009735
7662569 - 7751665
89097
ENSAPLT00000045082
7686194 - 7751665
65472
ENSAPLT00000030552
7733020 - 7749394
16375
ENSAPLT00000026274
7690145 - 7752794
62650
ENSAPLT00000025496
7690145 - 7751665
61521