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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7745732_7746593_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7745732 - 7746593
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTACTC
5'SS Class:
major
3'SS Sequence:
TTGTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
GTAGCCTAAAAT
Flanking Amino Acid:
GTCKALYTFEGQNEGTISVA
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
64.4
39.8
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
83.9
0.76
0.9
81.2
36.5
Minor 5ss
42.7
-0.8
3.1
59.9
44.6
Minor BPS
53
0.17
1.9
70.97
45.3

Associated Gene:

Gene:
FNBP1
Ensembl Gene ID:
ENSAPLG00000009326
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009735
7662569 - 7751665
89097
ENSAPLT00000045082
7686194 - 7751665
65472
ENSAPLT00000030552
7733020 - 7749394
16375
ENSAPLT00000026274
7690145 - 7752794
62650
ENSAPLT00000025496
7690145 - 7751665
61521