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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7764196_7764307_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7764196 - 7764307
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
AATTGCTTCATT
Flanking Amino Acid:
QNAEAYVLFYRKSSEEAVRE
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
71.9
0.49
1
75.7
26.9
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
53.3
0.19
2.2
75.28
41.8

Associated Gene:

Gene:
USP20
Ensembl Gene ID:
ENSAPLG00000008760
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009150
7761070 - 7778318
17249