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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7771294_7772208_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7771294 - 7772208
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAACA
5'SS Class:
major
3'SS Sequence:
TTTTCCCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCCCAAACA
Flanking Amino Acid:
PRPASPCRTPEPDNDAYVRC
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
69.4
34.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.9
0.56
0.9
71.1
33.6
Minor 5ss
39.2
-1.2
2.9
50
46
Minor BPS
66.4
0.51
2
84.22
35.9

Associated Gene:

Gene:
USP20
Ensembl Gene ID:
ENSAPLG00000008760
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009150
7761070 - 7778318
17249