Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7772651_7773943_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7772651 - 7773943

Intron Length:

1293

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGGCCT

5'SS Class:

major

3'SS Sequence:

TGCTGCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAC

U12 Branch Point Sequence:

TGGATGCTAACA

Flanking Amino Acid:

NPMFRGYAQQDTQEFLRCLM

Intron Amino Acid Position:

231

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.8

0.59

63.1

Major BPS

69.4

0.48

1.1

69.6

35.5

Major PPT

80.2

0.68

0.9

76.7

37.5

Minor 5ss

26.6

-2.7

3.4

38.8

46.5

Minor BPS

43.9

-0.4

2.3

57.12

Associated Gene:

Gene:

USP20

Ensembl Gene ID:

ENSAPLG00000008760

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009150

7761070 - 7778318

17249