Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7774023_7775135_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7774023 - 7775135

Intron Length:

1113

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

CATATTTAAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAA

U12 Branch Point Sequence:

TTCTCCATATTT

Flanking Amino Acid:

KLVSEVWHKKRPSYVVPSSL

Intron Amino Acid Position:

204

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

72.6

38.9

Major BPS

79.5

0.73

0.9

36.9

Major PPT

0.38

1.1

62.5

Minor 5ss

29.4

-2.4

3.2

40.9

45.4

Minor BPS

59.9

0.39

1.9

80.67

41.5

Associated Gene:

Gene:

USP20

Ensembl Gene ID:

ENSAPLG00000008760

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009150

7761070 - 7778318

17249