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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7782007_7782824_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7782007 - 7782824
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAGCAT
U12 Branch Point Sequence:
CAGGCACCAAGT
Flanking Amino Acid:
EEDEELAREVRLKLEEAKEV
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
48.7
-0
1.4
57.8
39
Major PPT
90.5
0.91
0.7
89
28.1
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
35.5
-1
2.1
47.07
44.6

Associated Gene:

Gene:
C9orf78
Ensembl Gene ID:
ENSAPLG00000008571
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008935
7781924 - 7786802
4879