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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7783885_7784054_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7783885 - 7784054
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
GGTTTCCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTAAAACAAACA
Flanking Amino Acid:
MKKLKERGKDRINEEEDLNL
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
70.1
0.45
0.9
67.4
39.4
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
40.3
-0.7
2.2
56.54
41.6

Associated Gene:

Gene:
C9orf78
Ensembl Gene ID:
ENSAPLG00000008571
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008935
7781924 - 7786802
4879