Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7786188_7786631_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7786188 - 7786631

Intron Length:

444

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGC|GTAAGTTCA

5'SS Class:

major

3'SS Sequence:

CTGTTGTTTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTTAC

U12 Branch Point Sequence:

TGTTGTTTGAAG

Flanking Amino Acid:

VGDTERPEPERSPPNRKRPP

Intron Amino Acid Position:

260

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.3

68.6

39.2

Major BPS

62.6

0.31

1.2

55.1

41.7

Major PPT

70.4

0.46

1.1

70.9

38.9

Minor 5ss

41.4

-1

2.7

46.2

42.2

Minor BPS

49.3

-0.2

60.07

Associated Gene:

Gene:

C9orf78

Ensembl Gene ID:

ENSAPLG00000008571

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008935

7781924 - 7786802

4879