Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7799990_7800046_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7799990 - 7800046

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTGAAGGAG

5'SS Class:

weak_major

3'SS Sequence:

CACAAACAGTGAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTCAG

U12 Branch Point Sequence:

TTTTCAGCAACA

Flanking Amino Acid:

RRPKGREDIPYLCPQLIQKN

Intron Amino Acid Position:

242

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.6

0.09

1.1

46.7

37.2

Major BPS

0.65

1.5

85.7

34.9

Major PPT

40.6

-0.5

1.6

36.4

39.2

Minor 5ss

25.4

-2.8

3.5

37.5

47.3

Minor BPS

50.8

0.02

2.4

77.1

39.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021783

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022420

7799618 - 7801650

2033