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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7799994_7800227_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7799994 - 7800227
Intron Length:
234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAATAGGT
5'SS Class:
major
3'SS Sequence:
GCAACACAAACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTCAGCAACA
Flanking Amino Acid:
ESAGTKGVTVFEYLCGFFQS
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.7
0.25
1.1
57.4
39.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
49.4
-0
1
40.7
37.2
Minor 5ss
34.8
-1.7
3.6
53.4
44.8
Minor BPS
50.8
0.02
2.4
77.1
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021783
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024860
7799618 - 7801638
2021