Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7800123_7800296_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7800123 - 7800296

Intron Length:

174

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGGAAA

5'SS Class:

strong_major

3'SS Sequence:

TCTTTCCAAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAA

U12 Branch Point Sequence:

TCTTTCCAAACA

Flanking Amino Acid:

YYGKAIFIFLNNAGGDKITE

Intron Amino Acid Position:

216

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

77.7

Major BPS

68.1

0.45

1.3

78.7

34.9

Major PPT

74.3

0.55

0.9

70.6

33.9

Minor 5ss

33.3

-1.9

3.2

39.8

40.3

Minor BPS

54.4

0.13

71.21

41.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021783

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022420

7799618 - 7801650

2033