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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7800824_7801448_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7800824 - 7801448
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
CTCATTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCCCCTCTCATT
Flanking Amino Acid:
CNVKDTLNFSVVKMDLERKV
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
81.3
0.7
0.8
72.7
37.5
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
44.9
-0.3
2
61.17
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021783
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022420
7799618 - 7801650
2033