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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7816504_7817587_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7816504 - 7817587
Intron Length:
1084

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGGGAA
U12 Branch Point Sequence:
CTGTTGGGAATG
Flanking Amino Acid:
RQDPDVERCRRAHRNDMENI
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
89.9
21.7
Major BPS
48.8
-0
1.5
49.1
46.3
Major PPT
84.8
0.78
0.7
76.5
32.1
Minor 5ss
22.6
-3.2
3.5
34.1
41.4
Minor BPS
37.1
-1.1
2.5
42.6
43.6

Associated Gene:

Gene:
PTGES
Ensembl Gene ID:
ENSAPLG00000008242
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008562
7814497 - 7817837
3341