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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_79078_79158_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79078 - 79158
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
CTGTCTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
AGTTAAAGAAGT
Flanking Amino Acid:
YWLANYVWDMLNYLVPATCC
Intron Amino Acid Position:
1783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.4
44.7
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
82.1
0.72
0.8
76.9
31.8
Minor 5ss
33.5
-1.9
2.8
36.6
41.8
Minor BPS
39.5
-0.7
2.2
60.01
42.2

Associated Gene:

Gene:
ABCA2
Ensembl Gene ID:
ENSAPLG00000002548
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025674
72667 - 112105
39439
ENSAPLT00000017929
72667 - 112105
39439
ENSAPLT00000002789
72667 - 112105
39439
ENSAPLT00000036122
70053 - 112105
42053