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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_79334_79535_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79334 - 79535
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTATGTCCA
5'SS Class:
major
3'SS Sequence:
CTCTTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
GGGTGATGATGT
Flanking Amino Acid:
KTSASLSLDYLLQGTDVVIA
Intron Amino Acid Position:
1724

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.1
57.6
41.2
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
85.8
0.81
0.7
80.4
24.9
Minor 5ss
43.5
-0.7
2.8
60.7
43.6
Minor BPS
34.6
-1
2.2
47.49
44.3

Associated Gene:

Gene:
ABCA2
Ensembl Gene ID:
ENSAPLG00000002548
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025674
72667 - 112105
39439
ENSAPLT00000017929
72667 - 112105
39439
ENSAPLT00000002789
72667 - 112105
39439
ENSAPLT00000036122
70053 - 112105
42053