About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_79597_80034_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79597 - 80034
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGCC
5'SS Class:
major
3'SS Sequence:
CTTTTTGCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCCTAT
U12 Branch Point Sequence:
ATAGAAACAATC
Flanking Amino Acid:
PKSKGNPAAYGITVTNHPMN
Intron Amino Acid Position:
1704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
62.8
37.8
Major BPS
60
0.25
1.2
58.5
40
Major PPT
85.5
0.8
0.8
80.7
31.4
Minor 5ss
25.5
-2.8
3.4
34
41.8
Minor BPS
37
-1
1.9
45.56
36

Associated Gene:

Gene:
ABCA2
Ensembl Gene ID:
ENSAPLG00000002548
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002789
72667 - 112105
39439
ENSAPLT00000036122
70053 - 112105
42053
ENSAPLT00000025674
72667 - 112105
39439
ENSAPLT00000017929
72667 - 112105
39439