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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8008562_8008773_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8008562 - 8008773
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
CTCACTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTTCTGTAATT
Flanking Amino Acid:
IQLALQLAYYRMYGHACATY
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.6
40.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
73.6
0.53
0.8
64.8
36.3
Minor 5ss
38.2
-1.3
3
48.7
47
Minor BPS
64.9
0.55
2
84.22
37.1

Associated Gene:

Gene:
CRAT
Ensembl Gene ID:
ENSAPLG00000007161
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007450
7999531 - 8010833
11303