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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8008910_8009375_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8008910 - 8009375
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGGATC
5'SS Class:
major
3'SS Sequence:
GTGTTCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAC
U12 Branch Point Sequence:
TCGGCAAAAACT
Flanking Amino Acid:
VQSMDDPNKSDQEKADLLRR
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
73.3
37.5
Major BPS
64.9
0.37
0.9
55.4
32.3
Major PPT
76.3
0.59
0.9
73.7
36.9
Minor 5ss
31.9
-2.1
3.3
43.8
43.8
Minor BPS
43
-0.4
2.2
61.54
47.9

Associated Gene:

Gene:
CRAT
Ensembl Gene ID:
ENSAPLG00000007161
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007450
7999531 - 8010833
11303