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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8034920_8035541_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8034920 - 8035541
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTTAC
U12 Branch Point Sequence:
CTTACCGTAAGC
Flanking Amino Acid:
QLSEVCGFFKHQIVQYLKDM
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
60.1
0.25
1
51.3
35.1
Major PPT
89
0.88
0.6
84.1
23.9
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
49.1
-0
2.3
66.73
45.1

Associated Gene:

Gene:
MIGA2
Ensembl Gene ID:
ENSAPLG00000006834
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007117
8034719 - 8046116
11398