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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8037595_8038199_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8037595 - 8038199
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAGC
5'SS Class:
major
3'SS Sequence:
TCTGTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ACCTTCTGAAGT
Flanking Amino Acid:
VIGLMTKAEKNPKAFLESYE
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69
38.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85.1
0.79
0.8
76.9
37.3
Minor 5ss
31.2
-2.1
3.4
42.5
44.6
Minor BPS
51.5
0.13
1.8
66.24
44.6

Associated Gene:

Gene:
MIGA2
Ensembl Gene ID:
ENSAPLG00000006834
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007117
8034719 - 8046116
11398