Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8038287_8038618_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8038287 - 8038618

Intron Length:

332

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGATG

5'SS Class:

strong_major

3'SS Sequence:

GTTCCCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTCAC

U12 Branch Point Sequence:

GCCACCGCCACT

Flanking Amino Acid:

KLHCVRQAFQELLEDESNQL

Intron Amino Acid Position:

361

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.8

78.6

37.3

Major BPS

64.9

0.37

29.8

Major PPT

0.74

0.8

76.8

31.7

Minor 5ss

30.4

-2.2

3.2

38.7

46.6

Minor BPS

38.8

-0.8

2.4

53.21

47.5

Associated Gene:

Gene:

MIGA2

Ensembl Gene ID:

ENSAPLG00000006834

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007117

8034719 - 8046116

11398