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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8039922_8040087_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8039922 - 8040087
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCCGG
5'SS Class:
major
3'SS Sequence:
TTCCCACCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
TAACCTCCAACA
Flanking Amino Acid:
LPSDSMLLDLEKTLMLPLAD
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
50.6
47.7
Major BPS
61.1
0.28
1
67
29.8
Major PPT
76.1
0.59
0.8
66.5
34.6
Minor 5ss
31.4
-2.1
3
30.3
42.8
Minor BPS
47.7
-0.1
1.8
60.57
38.5

Associated Gene:

Gene:
MIGA2
Ensembl Gene ID:
ENSAPLG00000006834
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007117
8034719 - 8046116
11398