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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8048769_8055909_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8048769 - 8055909
Intron Length:
7141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGCC
5'SS Class:
major
3'SS Sequence:
CTCCTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TAGAACTGAACT
Flanking Amino Acid:
AGVFFSRAMQFTEEKLGQAE
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
65.5
34.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
84.7
0.78
0.7
79.9
25.5
Minor 5ss
23.6
-3
3.5
32.2
42.8
Minor BPS
55.7
0.26
1.7
72.55
43.3

Associated Gene:

Gene:
SH3GLB2
Ensembl Gene ID:
ENSAPLG00000006680
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006978
8048706 - 8069433
20728