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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8067250_8067457_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8067250 - 8067457
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
CCCTCCCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
GGCCCCCAAACT
Flanking Amino Acid:
LLLEGISSTHVNHLRCLHEF
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
68.8
43.8
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
66.3
0.37
0.9
57.6
32.2
Minor 5ss
33.8
-1.8
3
40.5
38.8
Minor BPS
47
-0.1
2
63.99
45.5

Associated Gene:

Gene:
SH3GLB2
Ensembl Gene ID:
ENSAPLG00000006680
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006978
8048706 - 8069433
20728