About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8067559_8068431_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8067559 - 8068431
Intron Length:
873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACTG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTGTGTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
CTTAACTGAACT
Flanking Amino Acid:
YMLDLQKQLGRFSGTFVGNA
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
71.5
40.2
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
57.5
0.17
1.2
62.7
37.5
Minor 5ss
30.1
-2.3
3.1
38.3
46.6
Minor BPS
60.6
0.41
1.7
79.07
42.4

Associated Gene:

Gene:
SH3GLB2
Ensembl Gene ID:
ENSAPLG00000006680
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006978
8048706 - 8069433
20728