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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8073450_8073673_R

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8073450 - 8073673
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCAGT
5'SS Class:
major
3'SS Sequence:
CTTCTGATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGCTTCTGATTT
Flanking Amino Acid:
RMKQELSSELSTLLSSLSRY
Intron Amino Acid Position:
1657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
70.5
41.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
80.6
0.69
0.9
77.4
35.6
Minor 5ss
35.8
-1.6
3
45.5
44.6
Minor BPS
51.2
0.12
1.7
68.88
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005569
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005924
8073279 - 8099964
26686