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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8073804_8074260_R

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8073804 - 8074260
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTTCCTTGCACA
Flanking Amino Acid:
LNMQEGTKTLKSLLMFTMEN
Intron Amino Acid Position:
1613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
79.5
0.66
0.9
75.6
32.9
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
55.2
0.16
1.9
73.68
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005569
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005924
8073279 - 8099964
26686