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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8076831_8077583_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8076831 - 8077583
Intron Length:
753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CTGTCCTTTACA
Flanking Amino Acid:
VGVHQERILQCLNAVRTVQS
Intron Amino Acid Position:
1405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
74
36.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
82.2
0.72
0.8
75.9
32.7
Minor 5ss
40.6
-1
2.8
52.4
44.8
Minor BPS
69.8
0.62
1.7
75.18
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005569
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005924
8073279 - 8099964
26686