Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8079489_8080700_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8079489 - 8080700

Intron Length:

1212

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGTGG

5'SS Class:

strong_major

3'SS Sequence:

GTGAATGTCACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAC

U12 Branch Point Sequence:

TGCATGTTAACT

Flanking Amino Acid:

ITVLQMKEMKVNEIPQYSQL

Intron Amino Acid Position:

1193

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

66.5

41.6

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

61.5

0.26

1.1

53.1

45.6

Minor 5ss

30.7

-2.2

3.2

37.8

47.1

Minor BPS

53.5

0.19

2.1

72.79

44.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005569

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005924

8073279 - 8099964

26686