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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8080847_8081276_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8080847 - 8081276
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTGTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TCTTGTCTAATC
Flanking Amino Acid:
LLLILLKQWKSELGSVDKII
Intron Amino Acid Position:
1144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.9
90.9
28.7
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
83.8
0.76
1
84.6
36
Minor 5ss
40.3
-1.1
3.2
59.2
45.4
Minor BPS
49.9
-0
2.1
66.2
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005569
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005924
8073279 - 8099964
26686