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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8084017_8084661_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8084017 - 8084661
Intron Length:
645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAGAG
5'SS Class:
major
3'SS Sequence:
CCTTTTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GGAGCTGTAACC
Flanking Amino Acid:
EVKDGSDGSKEFSLGEWSCL
Intron Amino Acid Position:
952

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
59.3
40
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
78.5
0.64
0.8
77
31.8
Minor 5ss
27.7
-2.6
3.6
37
47.6
Minor BPS
47.3
-0.2
2.1
56.41
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005569
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005924
8073279 - 8099964
26686