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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8088543_8089148_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8088543 - 8089148
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATGCGTAATA
Flanking Amino Acid:
ITSRIYMLLQRLTTVISPPV
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.6
1.05
0.7
81.4
32.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.4
0.66
1
78.7
33.6
Minor 5ss
34.5
-1.8
2.9
43.8
43.9
Minor BPS
51.9
0.05
2.4
71.78
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005569
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005924
8073279 - 8099964
26686