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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8089276_8089617_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8089276 - 8089617
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTGCTTTATGC
Flanking Amino Acid:
EMLLHVVSTADVIQHCQRVK
Intron Amino Acid Position:
561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
73.8
33
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
81.2
0.7
0.9
77.3
36
Minor 5ss
31.8
-2.1
3
37.5
47.2
Minor BPS
53.3
0.08
2
69.42
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005569
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005924
8073279 - 8099964
26686