About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8095860_8096321_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8095860 - 8096321
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCCATAGC
5'SS Class:
major
3'SS Sequence:
TGGTTTGCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AATTGTTTATTT
Flanking Amino Acid:
DYRGTRDSLKTVLQDERQSQ
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.4
60.6
44.4
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
72.4
0.5
1
70.2
41.3
Minor 5ss
29.8
-2.3
2.8
37.8
39.6
Minor BPS
50.9
0.11
2
71.01
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005569
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005924
8073279 - 8099964
26686