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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8096403_8097085_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8096403 - 8097085
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTGCCTTTTACT
Flanking Amino Acid:
ELGLRVSKFLGLDEEQSVQL
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
92.2
0.95
0.6
91.3
20.3
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
65.7
0.58
1.6
81.46
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005569
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005924
8073279 - 8099964
26686