About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8097841_8098439_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8097841 - 8098439
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCCA
5'SS Class:
major
3'SS Sequence:
GTTCTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAG
U12 Branch Point Sequence:
TGTTCAGTAGTA
Flanking Amino Acid:
LLGRSALREPAQIAAELNKH
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
65.7
40.1
Major BPS
60.8
0.27
1.6
71.4
45.1
Major PPT
87.2
0.84
0.7
84.7
30.2
Minor 5ss
36.7
-1.5
2.9
48.4
41.1
Minor BPS
46
-0.3
2.4
65.34
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005569
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005924
8073279 - 8099964
26686