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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8145411_8146336_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8145411 - 8146336
Intron Length:
926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
TTGTCCTTCTCT
Flanking Amino Acid:
RRLEGVDKNIWVEFVKLAAT
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
29.5
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
80.9
0.7
0.7
72.7
32.1
Minor 5ss
35.2
-1.7
2.8
38.4
40.8
Minor BPS
47.3
-0.1
3.6
83.61
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005215
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005416
8145358 - 8150287
4930