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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8147297_8147385_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8147297 - 8147385
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACCCAG
5'SS Class:
major
3'SS Sequence:
CCCTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGCCAT
U12 Branch Point Sequence:
GCTGCTGCCATG
Flanking Amino Acid:
FQAFVDEGDEVIIIEPFFDC
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
59.7
46.7
Major BPS
49.9
-0
1.4
61.8
44.5
Major PPT
80.7
0.69
0.7
72.1
32.5
Minor 5ss
42.8
-0.8
3
55.8
48.4
Minor BPS
33.7
-1.4
2.2
34.97
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005215
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005416
8145358 - 8150287
4930