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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8148580_8148694_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8148580 - 8148694
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTGGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACCAAA
U12 Branch Point Sequence:
GATTTAGCACCT
Flanking Amino Acid:
GKTFSVTGWKVGWTVGPNRL
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
54.9
0.12
1.2
63
32
Major PPT
66.8
0.38
0.9
59.7
35.6
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
38.4
-0.8
2.4
59
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005215
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005416
8145358 - 8150287
4930