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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8151868_8152136_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8151868 - 8152136
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
GCCCTGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAG
U12 Branch Point Sequence:
CGGCCCCCAGCC
Flanking Amino Acid:
AREEEQKEDRGRHHTLSVAL
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
39.5
-0.6
1.5
43.7
39.4
Major PPT
74.7
0.56
0.9
67.8
37.6
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
40.3
-0.7
2
45.98
42.2

Associated Gene:

Gene:
SPOUT1
Ensembl Gene ID:
ENSAPLG00000005094
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005274
8151768 - 8155637
3870