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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8152297_8152665_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8152297 - 8152665
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGACG
5'SS Class:
major
3'SS Sequence:
TCTCTTCCAGGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAG
U12 Branch Point Sequence:
AGTTTACAGACT
Flanking Amino Acid:
VVFDEYGEDTNVEGEFEGIG
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.8
40.7
Major BPS
58.8
0.22
1.6
75
40
Major PPT
55.7
0.13
1.7
66.7
34.2
Minor 5ss
34.3
-1.8
3.1
41.5
38.9
Minor BPS
42.7
-0.5
2.1
63.76
40.2

Associated Gene:

Gene:
SPOUT1
Ensembl Gene ID:
ENSAPLG00000005094
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005274
8151768 - 8155637
3870