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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8153962_8154325_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8153962 - 8154325
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTGC
5'SS Class:
major
3'SS Sequence:
GCTTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GGGTTGTTAATC
Flanking Amino Acid:
TVRLQEPQNPEAKVRKGIVV
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
66
40.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
81.1
0.7
0.8
77.3
31.5
Minor 5ss
44.3
-0.6
2.8
59.8
44.8
Minor BPS
49.7
-0
2
59.02
40.5

Associated Gene:

Gene:
SPOUT1
Ensembl Gene ID:
ENSAPLG00000005094
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005274
8151768 - 8155637
3870