Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8159633_8163987_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

8159633 - 8163987

Intron Length:

4355

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTGTTAATG

5'SS Class:

weak_major

3'SS Sequence:

TGTGGCCAAGTAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CATTAAC

U12 Branch Point Sequence:

GTGTGGCCAAGT

Flanking Amino Acid:

CCAMLTSSTGITGAILGIFP

Intron Amino Acid Position:

305

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.9

0.19

1.1

59.1

39.3

Major BPS

69.5

0.49

71.3

30.3

Major PPT

54.6

0.1

49.2

39.6

Minor 5ss

40.2

-1.1

53.3

43.9

Minor BPS

33.4

-1.1

2.6

53.29

47.5

Associated Gene:

Gene:

TBC1D13

Ensembl Gene ID:

ENSAPLG00000004702

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043067

8159476 - 8168412

8937